STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pcaC4-carboxymuconolactone decarboxylase. (250 aa)    
Predicted Functional Partners:
MA_0402
Conserved hypothetical protein.
   
 0.762
MA_0416
Conserved hypothetical protein.
   
 0.760
nodL
Nodulation protein L.
       0.682
MA_0411
Predicted protein.
 
     0.670
MA_0412
Predicted protein.
 
     0.612
MA_0413
Predicted protein.
 
     0.583
MA_0614
3-hydroxyisobutyrate dehydrogenase.
  
  
 0.513
MA_0407
Predicted protein.
 
    0.437
MA_0367
Conserved hypothetical protein.
 
     0.434
Your Current Organism:
Methanosarcina acetivorans
NCBI taxonomy Id: 188937
Other names: M. acetivorans C2A, Methanosarcina acetivorans C2A, Methanosarcina acetivorans str. C2A
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.