MA_0807 protein (Methanosarcina acetivorans)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

MA_0807

NifU family protein. (220 aa)

Predicted Functional Partners:

MA_0808

0.996

iscS

0.972

iscS-2

0.971

MA_0236

0.949

MA_1950

0.903

MA_0087

0.882

hsp70

0.882

MA_0903

0.850

MA_0809

0.835

MA_0810

0.832

Your Current Organism:

Methanosarcina acetivorans

NCBI taxonomy Id: 188937
Other names: M. acetivorans C2A, Methanosarcina acetivorans C2A, Methanosarcina acetivorans str. C2A

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MA_0087	MA_0236	MA_0087	MA_0236	DnaK protein.	NifS protein.	0.403
MA_0087	MA_0807	MA_0087	MA_0807	DnaK protein.	NifU family protein.	0.882
MA_0087	MA_0808	MA_0087	MA_0808	DnaK protein.	Homocysteine desulfhydrase.	0.626
MA_0087	MA_0903	MA_0087	MA_0903	DnaK protein.	HesB family protein.	0.473
MA_0087	hsp70	MA_0087	MA_1478	DnaK protein.	Heat shock protein 70; Acts as a chaperone.	0.902
MA_0087	iscS	MA_0087	MA_2718	DnaK protein.	Cysteine desulphurase; Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins.	0.573
MA_0087	iscS-2	MA_0087	MA_3264	DnaK protein.	Cysteine desulphurase; Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins.	0.573
MA_0236	MA_0087	MA_0236	MA_0087	NifS protein.	DnaK protein.	0.403
MA_0236	MA_0807	MA_0236	MA_0807	NifS protein.	NifU family protein.	0.949
MA_0236	MA_0808	MA_0236	MA_0808	NifS protein.	Homocysteine desulfhydrase.	0.608
MA_0236	MA_0903	MA_0236	MA_0903	NifS protein.	HesB family protein.	0.522
MA_0236	iscS	MA_0236	MA_2718	NifS protein.	Cysteine desulphurase; Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins.	0.608
MA_0236	iscS-2	MA_0236	MA_3264	NifS protein.	Cysteine desulphurase; Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins.	0.608
MA_0807	MA_0087	MA_0807	MA_0087	NifU family protein.	DnaK protein.	0.882
MA_0807	MA_0236	MA_0807	MA_0236	NifU family protein.	NifS protein.	0.949
MA_0807	MA_0808	MA_0807	MA_0808	NifU family protein.	Homocysteine desulfhydrase.	0.996
MA_0807	MA_0809	MA_0807	MA_0809	NifU family protein.	Conserved hypothetical protein.	0.835
MA_0807	MA_0810	MA_0807	MA_0810	NifU family protein.	Conserved hypothetical protein.	0.832
MA_0807	MA_0903	MA_0807	MA_0903	NifU family protein.	HesB family protein.	0.850
MA_0807	MA_1950	MA_0807	MA_1950	NifU family protein.	Hypothetical protein.	0.903