Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MA_0809Conserved hypothetical protein. (139 aa)    
Predicted Functional Partners:
MA_0810
Conserved hypothetical protein.
 
  
 0.974
ndh
NADH dehydrogenase.
  
 0.944
MA_0808
Homocysteine desulfhydrase.
       0.843
MA_0807
NifU family protein.
 
     0.835
MA_2500
Hypothetical protein (multi-domain).
 
  
 0.549
MA_1794
Metallo-beta-lactamase.
  
  
 0.541
MA_2320
Metallo-beta-lactamase.
  
  
 0.541
MA_3178
Rhodanese family protein.
 
  
 0.530
MA_0746
Conserved hypothetical protein.
 
  
 0.520
hit
Histidine triad protein.
       0.440
Your Current Organism:
Methanosarcina acetivorans
NCBI taxonomy Id: 188937
Other names: M. acetivorans C2A, Methanosarcina acetivorans C2A, Methanosarcina acetivorans str. C2A
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