STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MA_0827Predicted protein. (191 aa)    
Predicted Functional Partners:
MA_4380
Conserved hypothetical protein.
 
     0.723
ramA
Methylamine methyltransferase corrinoid activation protein.
 
     0.721
MA_3972
Conserved hypothetical protein.
 
     0.717
MA_0849
Hypothetical protein (multi-domain).
 
     0.697
MA_3677
Predicted protein.
  
     0.684
MA_3678
Predicted protein.
  
     0.674
MA_2166
Hypothetical protein.
  
     0.662
pylD
Predicted protein; Likely catalyzes the NAD(P)-dependent oxidative deamination of (3R)-3-methyl-D-ornithyl-N6-L-lysine, resulting in the formation of pyrrolysine after spontaneous dehydration and cyclization of the intermediate. Is required for the biosynthesis of pyrrolysine.
  
     0.661
pylS
Predicted protein; Catalyzes the attachment of pyrrolysine to tRNA(Pyl). Pyrrolysine is a lysine derivative encoded by the termination codon UAG.
  
     0.658
mtaB1
Methanol-5-hydroxybenzimidazolylcobamide co-methyltransferase, isozyme 1.
 
     0.638
Your Current Organism:
Methanosarcina acetivorans
NCBI taxonomy Id: 188937
Other names: M. acetivorans C2A, Methanosarcina acetivorans C2A, Methanosarcina acetivorans str. C2A
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.