Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MA_0905Glycogen debranching enzyme-related protein (4-alpha-glucanotransferase). (680 aa)    
Predicted Functional Partners:
MA_3032
Alpha-amylase.
 
 
 0.905
malP
Phosphorylase.
 
 
 0.885
MA_4052
Alpha-amylase.
 
  
 0.817
MA_4053
Alpha-amylase.
 
  
 0.816
MA_4050
Glucan 1,4-alpha-glucosidase.
 
   
 0.710
MA_2345
LPS biosynthesis related protein.
 
 
 0.657
MA_3682
Conserved hypothetical protein.
 
 
 0.654
MA_0904
Predicted protein.
       0.560
MA_1190
Glucan 1,4-alpha-glucosidase.
 
   
 0.545
MA_2828
Conserved hypothetical protein.
   
   0.540
Your Current Organism:
Methanosarcina acetivorans
NCBI taxonomy Id: 188937
Other names: M. acetivorans C2A, Methanosarcina acetivorans C2A, Methanosarcina acetivorans str. C2A
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