Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MA_0926Conserved hypothetical protein. (133 aa)    
Predicted Functional Partners:
MA_1783
Conserved hypothetical protein.
  
     0.640
rpl29
Ribosomal protein L29p; Belongs to the universal ribosomal protein uL29 family.
 
     0.628
tgt-2
Archaeosine tRNA-ribosyltransferase.
 
     0.602
MA_4266
Conserved hypothetical protein.
  
     0.575
MA_3869
Conserved hypothetical protein.
  
    0.565
MA_4644
Conserved hypothetical protein.
 
   
 0.546
MA_3601
Predicted protein.
  
     0.534
MA_0545
Conserved hypothetical protein.
  
     0.529
MA_4513
Conserved hypothetical protein.
  
     0.529
rpl40e
Ribosomal protein L40e; Belongs to the eukaryotic ribosomal protein eL40 family.
  
     0.518
Your Current Organism:
Methanosarcina acetivorans
NCBI taxonomy Id: 188937
Other names: M. acetivorans C2A, Methanosarcina acetivorans C2A, Methanosarcina acetivorans str. C2A
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