Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MA_0936Conserved hypothetical protein. (320 aa)    
Predicted Functional Partners:
sufC
ABC transporter, ATP-binding protein.
 
 0.999
MA_4406
ABC transporter, ATP-binding protein.
 
 0.999
MA_4407
Conserved hypothetical protein.
  
  
0.935
MA_0236
NifS protein.
 
 
 0.848
MA_1950
Hypothetical protein.
 
 
 0.813
MA_0807
NifU family protein.
  
  
 0.697
MA_2717
NifU protein.
  
  
 0.697
nifU
Nitrogen fixation protein.
  
  
 0.697
MA_0940
Conserved hypothetical protein.
     
 0.660
cobY
Nucleoside triphosphate (NTP):5-deoxyadenosylcobinamide phosphate nucleotidyltransferase.
       0.657
Your Current Organism:
Methanosarcina acetivorans
NCBI taxonomy Id: 188937
Other names: M. acetivorans C2A, Methanosarcina acetivorans C2A, Methanosarcina acetivorans str. C2A
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