Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MA_1065Hypothetical protein (multi-domain). (229 aa)    
Predicted Functional Partners:
MA_1066
Predicted protein.
       0.778
MA_1064
Conserved hypothetical protein.
       0.605
MA_1061
Polysaccharide biosynthesis protein.
     
 0.567
MA_1062
Polysaccharide biosynthesis protein.
     
 0.567
rps5
Ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy.
    
 0.564
capK
Capsular polysaccharide biosynthesis protein.
       0.541
MA_1067
Polysaccharide deacetylase.
       0.523
fpoB
F(420)H(2) dehydrogenase, subunit FpoB; Belongs to the complex I 20 kDa subunit family.
   
 0.519
fpoD
F(420)H(2) dehydrogenase, subunit FpoD.
    
 0.505
MA_2309
Hypothetical protein (multi-domain).
   
 
 0.470
Your Current Organism:
Methanosarcina acetivorans
NCBI taxonomy Id: 188937
Other names: M. acetivorans C2A, Methanosarcina acetivorans C2A, Methanosarcina acetivorans str. C2A
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