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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MA_1069Conserved hypothetical protein. (295 aa)    
Predicted Functional Partners:
MA_0165
Conserved hypothetical protein.
  
  
 0.742
MA_4481
Cell surface protein.
 
    0.668
MA_4469
Conserved hypothetical protein.
 
    0.611
MA_4653
Conserved hypothetical protein.
  
     0.594
MA_0963
Conserved hypothetical protein; RNA-free RNase P that catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. Belongs to the HARP family.
  
     0.582
MA_0750
Conserved hypothetical protein.
 
   
 0.568
MA_3285
Conserved hypothetical protein.
  
    0.556
MA_0173
Conserved hypothetical protein.
 
     0.551
MA_3926
Conserved hypothetical protein.
 
     0.549
MA_3556
Predicted protein.
  
     0.541
Your Current Organism:
Methanosarcina acetivorans
NCBI taxonomy Id: 188937
Other names: M. acetivorans C2A, Methanosarcina acetivorans C2A, Methanosarcina acetivorans str. C2A
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