rps4 protein (Methanosarcina acetivorans) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

rps4

Ribosomal protein S4p; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. (218 aa)

Predicted Functional Partners:

rpl10e

0.999

rpl13

0.999

rps9

0.999

rps2

0.999

rps15

0.999

rps19

0.999

rps3

0.999

rpl14

0.999

rps4e

0.999

rps14

0.999

Your Current Organism:

Methanosarcina acetivorans

NCBI taxonomy Id: 188937
Other names: M. acetivorans C2A, Methanosarcina acetivorans C2A, Methanosarcina acetivorans str. C2A

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
rpl10e	rpl13	MA_0183	MA_0596	Ribosomal protein L10e; Belongs to the universal ribosomal protein uL16 family.	Ribosomal protein L13p; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.999
rpl10e	rpl14	MA_0183	MA_1082	Ribosomal protein L10e; Belongs to the universal ribosomal protein uL16 family.	Ribosomal protein L14p; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.	0.999
rpl10e	rps14	MA_0183	MA_1086	Ribosomal protein L10e; Belongs to the universal ribosomal protein uL16 family.	Ribosomal protein S14p; Binds 16S rRNA, required for the assembly of 30S particles.	0.998
rpl10e	rps15	MA_0183	MA_0949	Ribosomal protein L10e; Belongs to the universal ribosomal protein uL16 family.	Ribosomal protein S15p.	0.999
rpl10e	rps19	MA_0183	MA_1076	Ribosomal protein L10e; Belongs to the universal ribosomal protein uL16 family.	Ribosomal protein S19p; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.	0.999
rpl10e	rps2	MA_0183	MA_0600	Ribosomal protein L10e; Belongs to the universal ribosomal protein uL16 family.	Ribosomal protein S2p; Belongs to the universal ribosomal protein uS2 family.	0.998
rpl10e	rps3	MA_0183	MA_1078	Ribosomal protein L10e; Belongs to the universal ribosomal protein uL16 family.	Ribosomal protein S3p; Binds the lower part of the 30S subunit head. Belongs to the universal ribosomal protein uS3 family.	0.998
rpl10e	rps4	MA_0183	MA_1109	Ribosomal protein L10e; Belongs to the universal ribosomal protein uL16 family.	Ribosomal protein S4p; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.	0.999
rpl10e	rps4e	MA_0183	MA_1084	Ribosomal protein L10e; Belongs to the universal ribosomal protein uL16 family.	Ribosomal protein S4e; Belongs to the eukaryotic ribosomal protein eS4 family.	0.997
rpl10e	rps9	MA_0183	MA_0597	Ribosomal protein L10e; Belongs to the universal ribosomal protein uL16 family.	Ribosomal protein S9p; Belongs to the universal ribosomal protein uS9 family.	0.998
rpl13	rpl10e	MA_0596	MA_0183	Ribosomal protein L13p; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	Ribosomal protein L10e; Belongs to the universal ribosomal protein uL16 family.	0.999
rpl13	rpl14	MA_0596	MA_1082	Ribosomal protein L13p; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	Ribosomal protein L14p; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.	0.999
rpl13	rps14	MA_0596	MA_1086	Ribosomal protein L13p; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	Ribosomal protein S14p; Binds 16S rRNA, required for the assembly of 30S particles.	0.998
rpl13	rps15	MA_0596	MA_0949	Ribosomal protein L13p; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	Ribosomal protein S15p.	0.998
rpl13	rps19	MA_0596	MA_1076	Ribosomal protein L13p; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	Ribosomal protein S19p; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.	0.998
rpl13	rps2	MA_0596	MA_0600	Ribosomal protein L13p; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	Ribosomal protein S2p; Belongs to the universal ribosomal protein uS2 family.	0.999
rpl13	rps3	MA_0596	MA_1078	Ribosomal protein L13p; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	Ribosomal protein S3p; Binds the lower part of the 30S subunit head. Belongs to the universal ribosomal protein uS3 family.	0.998
rpl13	rps4	MA_0596	MA_1109	Ribosomal protein L13p; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	Ribosomal protein S4p; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.	0.999
rpl13	rps4e	MA_0596	MA_1084	Ribosomal protein L13p; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	Ribosomal protein S4e; Belongs to the eukaryotic ribosomal protein eS4 family.	0.997
rpl13	rps9	MA_0596	MA_0597	Ribosomal protein L13p; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	Ribosomal protein S9p; Belongs to the universal ribosomal protein uS9 family.	0.999

page 1 of 6

Server load: low (40%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Co-occurrence

Textmining

Co-expression

© STRING Consortium 2026

Credits

Access

Info

About