STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MA_1127Ribosomal RNA adenine dimethylase. (275 aa)    
Predicted Functional Partners:
MA_1128
ABC transporter, solute-binding protein.
 
     0.814
MA_1130
Iron ABC transporter, solute-binding protein.
 
     0.553
MA_1129
Hypothetical protein (multi-domain).
 
     0.466
MA_2773
O-methyltransferase.
 
    0.459
MA_0715
Conserved hypothetical protein.
 
     0.442
MA_2778
Predicted protein.
 
    0.437
MA_2777
iron(III) ABC transporter, solute-binding protein.
 
     0.406
MA_2942
Transposase.
  
     0.403
Your Current Organism:
Methanosarcina acetivorans
NCBI taxonomy Id: 188937
Other names: M. acetivorans C2A, Methanosarcina acetivorans C2A, Methanosarcina acetivorans str. C2A
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.