Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MA_1145Hypothetical protein (multi-domain). (320 aa)    
Predicted Functional Partners:
MA_0563
Conserved hypothetical protein.
  
     0.455
MA_3369
Hypothetical protein (multi-domain).
  
     0.445
MA_0441
Hypothetical protein (multi-domain).
  
     0.427
MA_2897
Hypothetical protein (multi-domain).
  
     0.419
MA_3633
Predicted protein.
  
     0.417
MA_0703
Hypothetical protein (multi-domain).
  
     0.413
MA_3270
Predicted protein.
  
     0.413
MA_1576
Predicted protein.
  
     0.407
MA_2347
Predicted protein.
  
     0.407
MA_0793
Predicted protein.
  
     0.404
Your Current Organism:
Methanosarcina acetivorans
NCBI taxonomy Id: 188937
Other names: M. acetivorans C2A, Methanosarcina acetivorans C2A, Methanosarcina acetivorans str. C2A
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