STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MA_1177Polysaccharide ABC transporter, ATP-binding protein. (409 aa)    
Predicted Functional Partners:
MA_1176
Polysaccharide ABC transporter, permease protein.
 
 0.999
MA_1175
Mannosyltransferase.
 
 
 0.886
MA_1179
Glycosyltransferase.
 
 
 0.864
MA_1178
Conserved hypothetical protein.
 
     0.839
MA_1180
Hexosyltransferase.
 
     0.809
MA_2170
Glycosyltransferase.
 
  
 0.619
MA_3758
Rhamnosyl transferase.
 
  
 0.619
rfbM-2
Mannose-1-phosphate guanylyltransferase (GDP); Belongs to the mannose-6-phosphate isomerase type 2 family.
  
  
 0.579
MA_2169
Dolichyl-phosphate beta-D-mannosyltransferase.
 
  
 0.578
dpm
Dolichyl-phosphate beta-D-mannosyltransferase.
 
  
 0.565
Your Current Organism:
Methanosarcina acetivorans
NCBI taxonomy Id: 188937
Other names: M. acetivorans C2A, Methanosarcina acetivorans C2A, Methanosarcina acetivorans str. C2A
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.