Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MA_1539Conserved hypothetical protein. (298 aa)    
Predicted Functional Partners:
MA_1537
Conserved hypothetical protein.
 
    0.947
MA_1536
ABC transporter, ATP-binding protein.
 
 
 0.905
MA_1540
Predicted protein.
 
     0.832
MA_1538
Conserved hypothetical protein.
 
    
0.793
MA_4361
Conserved hypothetical protein.
 
    0.775
gldA-3
Gliding motility protein.
 
 
 0.550
MA_3583
ABC transporter, permease protein.
 
   
 0.533
MA_1535
Predicted protein.
       0.504
MA_4036
ABC transporter, ATP-binding protein.
 
 
 0.498
MA_4366
ABC transporter, ATP-binding protein.
 
 
 0.471
Your Current Organism:
Methanosarcina acetivorans
NCBI taxonomy Id: 188937
Other names: M. acetivorans C2A, Methanosarcina acetivorans C2A, Methanosarcina acetivorans str. C2A
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