Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MA_1569Pap2 superfamily protein. (382 aa)    
Predicted Functional Partners:
atpC-2
H(+)-transporting ATP synthase, subunit C; Produces ATP from ADP in the presence of a proton gradient across the membrane.
 
 
 
 0.812
rpl6
Ribosomal protein L6p; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
   
 0.788
atpI
H(+)-transporting ATP synthase, subunit I; Belongs to the V-ATPase 116 kDa subunit family.
 
 
 
 0.767
MA_1028
Long-chain fatty-acid-CoA ligase.
 
 0.743
MA_3717
Long-chain fatty-acid-CoA ligase.
 
 0.738
atpF
H(+)-transporting ATP synthase, subunit F; Produces ATP from ADP in the presence of a proton gradient across the membrane.
  
 
 0.722
MA_1422
Long-chain fatty-acid-CoA ligase.
  
 0.687
MA_1576
Predicted protein.
  
     0.662
MA_1572
Predicted protein.
  
     0.633
MA_0441
Hypothetical protein (multi-domain).
  
     0.632
Your Current Organism:
Methanosarcina acetivorans
NCBI taxonomy Id: 188937
Other names: M. acetivorans C2A, Methanosarcina acetivorans C2A, Methanosarcina acetivorans str. C2A
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