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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MA_1973Integral membrane protein. (462 aa)    
Predicted Functional Partners:
MA_1444
Conserved hypothetical protein.
  
     0.626
endA
tRNA intron endonuclease; Endonuclease that removes tRNA introns. Cleaves pre-tRNA at the 5'- and 3'-splice sites to release the intron. The products are an intron and two tRNA half-molecules bearing 2',3' cyclic phosphate and 5'-OH termini. Recognizes a pseudosymmetric substrate in which 2 bulged loops of 3 bases are separated by a stem of 4 bp (By similarity).
 
     0.620
MA_2449
Sterol-regulatory element-binding protein intramembrane protease.
 
     0.614
MA_2574
Hypothetical protein (multi-domain).
  
     0.605
recJ
ss-DNA-specific exonuclease.
 
     0.604
MA_4580
Conserved hypothetical protein.
  
     0.604
MA_3687
Conserved hypothetical protein.
  
     0.595
MA_3754
Transmembrane oligosaccharyl transferase.
  
     0.592
MA_3752
Transmembrane oligosaccharyl transferase.
  
     0.591
MA_3432
Conserved hypothetical protein.
 
     0.590
Your Current Organism:
Methanosarcina acetivorans
NCBI taxonomy Id: 188937
Other names: M. acetivorans C2A, Methanosarcina acetivorans C2A, Methanosarcina acetivorans str. C2A
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.