Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MA_1989Hypothetical protein (multi-domain). (1052 aa)    
Predicted Functional Partners:
mcp-1
Methyl-accepting chemotaxis protein.
  
  
  0.920
mcp-2
Methyl-accepting chemotaxis protein.
  
  
  0.918
cheA2
Chemotaxis sensor histidine kinase.
  
  
  0.916
cheA1
Chemotaxis sensor histidine kinase.
  
  
  0.916
MA_3962
Sensory transduction histidine kinase.
 
      0.743
cheW1
Chemotaxis signal transduction coupling protein.
  
  
  0.729
cheW2
Chemotaxis signal transduction coupling protein.
  
  
  0.726
MA_1990
Predicted protein.
       0.628
MA_1957
Sensory transduction histidine kinase.
      0.572
MA_2013
Sensory transduction histidine kinase.
     0.413
Your Current Organism:
Methanosarcina acetivorans
NCBI taxonomy Id: 188937
Other names: M. acetivorans C2A, Methanosarcina acetivorans C2A, Methanosarcina acetivorans str. C2A
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