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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
treXGlycogen debranching enzyme. (752 aa)    
Predicted Functional Partners:
malP
Phosphorylase.
 
 
 0.991
MA_3032
Alpha-amylase.
 
  
0.978
MA_1641
Alpha-amylase family protein.
 
  
 0.943
MA_4052
Alpha-amylase.
    
 0.915
MA_4053
Alpha-amylase.
    
 0.915
argF
Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. OTCase family.
  
  
 0.911
MA_0451
Beta-phosphoglucomutase.
 
   
 0.497
pyk
Pyruvate kinase; Belongs to the pyruvate kinase family.
 
   
 0.489
MA_3875
Hydrolase family protein.
 
   
 0.479
MA_1840
Fructokinase.
 
   
 0.471
Your Current Organism:
Methanosarcina acetivorans
NCBI taxonomy Id: 188937
Other names: M. acetivorans C2A, Methanosarcina acetivorans C2A, Methanosarcina acetivorans str. C2A
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.