STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MA_2002Conserved hypothetical protein. (417 aa)    
Predicted Functional Partners:
MA_3259
Serine/threonine specific protein phosphatase.
   
 0.588
MA_4202
Conserved hypothetical protein.
   
 0.588
ndh
NADH dehydrogenase.
  
 
 0.498
cdc6
Cell division control protein 6; Involved in regulation of DNA replication.
  
     0.467
MA_3638
Conserved hypothetical protein.
  
     0.444
MA_2283
Isochorismatase.
 
 
 0.440
alkA
DNA-3-methyladenine glycosylase II.
 
  
 0.434
MA_4401
GTP-binding protein.
 
 
 0.423
MA_1949
Glutamate decarboxylase.
 
  
 0.417
MA_4411
Isochorismatase.
 
 
 0.400
Your Current Organism:
Methanosarcina acetivorans
NCBI taxonomy Id: 188937
Other names: M. acetivorans C2A, Methanosarcina acetivorans C2A, Methanosarcina acetivorans str. C2A
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.