Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
MA_2091Short chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (245 aa)    
Predicted Functional Partners:
MA_2093
Predicted protein.
       0.796
MA_2092
Predicted protein.
       0.773
MA_3717
Long-chain fatty-acid-CoA ligase.
 
 
 0.773
MA_1028
Long-chain fatty-acid-CoA ligase.
 
 
 0.771
MA_1422
Long-chain fatty-acid-CoA ligase.
  
 
 0.738
truB
rRNA pseudouridine synthase; Could be responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 2 subfamily.
 
     0.694
eif2B2
Translation initiation factor 2B, subunit 2; Belongs to the eIF-2B alpha/beta/delta subunits family.
    
 
 0.686
cmk
Cytidylate kinase.
       0.617
MA_3377
Conserved hypothetical protein.
    
   0.588
atpI
H(+)-transporting ATP synthase, subunit I; Belongs to the V-ATPase 116 kDa subunit family.
 
 
 
 0.578
Your Current Organism:
Methanosarcina acetivorans
NCBI taxonomy Id: 188937
Other names: M. acetivorans C2A, Methanosarcina acetivorans C2A, Methanosarcina acetivorans str. C2A
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