Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MA_2121Conserved hypothetical protein. (458 aa)    
Predicted Functional Partners:
MA_2122
Type I site-specific deoxyribonuclease.
  
    0.561
MA_1581
Conserved hypothetical protein.
 
     0.538
MA_3153
Conserved hypothetical protein.
 
     0.538
MA_2427
Conserved hypothetical protein.
 
     0.524
MA_2120
Type I site-specific deoxyribonuclease.
       0.507
MA_3577
Conserved hypothetical protein.
 
     0.501
MA_2118
Conserved hypothetical protein.
  
    0.484
MA_2119
Hypothetical protein (multi-domain).
       0.483
MA_2412
Conserved hypothetical protein.
 
     0.435
MA_2366
Conserved hypothetical protein.
 
     0.432
Your Current Organism:
Methanosarcina acetivorans
NCBI taxonomy Id: 188937
Other names: M. acetivorans C2A, Methanosarcina acetivorans C2A, Methanosarcina acetivorans str. C2A
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