STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fecCFe(III) dicitrate ABC transporter, permease. (389 aa)    
Predicted Functional Partners:
fecE
Fe(III) dicitrate ABC transporter, ATP-binding protein.
 
     0.919
fecD
Fe(III) dicitrate ABC transporter, permease.
 
     0.910
ubiE
Ubiquinone/menaquinone biosynthesis methyltransferase.
       0.777
ubiE-2
Ubiquinone/menaquinone biosynthesis methyltransferase.
 
     0.763
MA_1130
Iron ABC transporter, solute-binding protein.
  
     0.461
MA_2153
Periplasmic binding protein.
 
    
0.444
MA_2155
Hypothetical protein (multi-domain).
 
     0.437
MA_2154
Predicted protein.
       0.422
MA_2156
Periplasmic binding protein.
  
     0.417
Your Current Organism:
Methanosarcina acetivorans
NCBI taxonomy Id: 188937
Other names: M. acetivorans C2A, Methanosarcina acetivorans C2A, Methanosarcina acetivorans str. C2A
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.