STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fecDFe(III) dicitrate ABC transporter, permease. (355 aa)    
Predicted Functional Partners:
fecE
Fe(III) dicitrate ABC transporter, ATP-binding protein.
 
 
 0.950
fecC
Fe(III) dicitrate ABC transporter, permease.
 
     0.910
ubiE
Ubiquinone/menaquinone biosynthesis methyltransferase.
       0.777
MA_2153
Periplasmic binding protein.
 
     0.777
MA_3453
Iron ABC transporter, ATP-binding protein.
 
 
 0.736
ubiE-2
Ubiquinone/menaquinone biosynthesis methyltransferase.
       0.732
MA_2776
iron(III) ABC transporter, ATP-binding protein.
 
 
 0.729
MA_3919
Iron ABC transporter, ATP-binding protein.
 
 
 0.729
MA_3922
Periplasmic binding protein.
 
 
 0.722
MA_0950
Ferric enterobactin transport ATP-binding protein.
 
 
 0.628
Your Current Organism:
Methanosarcina acetivorans
NCBI taxonomy Id: 188937
Other names: M. acetivorans C2A, Methanosarcina acetivorans C2A, Methanosarcina acetivorans str. C2A
Server load: low (20%) [HD]