Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ubiE-2Ubiquinone/menaquinone biosynthesis methyltransferase. (250 aa)    
Predicted Functional Partners:
fecC
Fe(III) dicitrate ABC transporter, permease.
 
     0.763
ubiE
Ubiquinone/menaquinone biosynthesis methyltransferase.
 
    
0.750
fecE
Fe(III) dicitrate ABC transporter, ATP-binding protein.
       0.733
fecD
Fe(III) dicitrate ABC transporter, permease.
       0.732
MA_3655
ubiE/COQ5 methyltransferase.
  
     0.662
MA_3737
Desulfoferrodoxin.
     
 0.616
MA_3915
ubiE/COQ5 methyltransferase.
 
   
 0.600
rps5
Ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy.
    
 0.564
MA_2153
Periplasmic binding protein.
 
     0.520
fpoB
F(420)H(2) dehydrogenase, subunit FpoB; Belongs to the complex I 20 kDa subunit family.
   
 0.519
Your Current Organism:
Methanosarcina acetivorans
NCBI taxonomy Id: 188937
Other names: M. acetivorans C2A, Methanosarcina acetivorans C2A, Methanosarcina acetivorans str. C2A
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