Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MA_2200MoxR-related protein. (515 aa)    
Predicted Functional Partners:
MA_2199
Conserved hypothetical protein.
 
     0.868
MA_0253
Hypothetical protein (multi-domain).
 
     0.774
MA_2843
Conserved hypothetical protein.
 
  
 0.494
MA_1002
Malate dehydrogenase (oxaloacetate decarboxylating) (NADP+).
 
  
 0.490
MA_3147
Conserved hypothetical protein.
 
  
 0.484
MA_2496
Predicted protein.
 
     0.468
MA_1279
Conserved hypothetical protein.
   
    0.444
istB-8
IstB helper protein.
     
 0.437
MA_1735
Malate dehydrogenase (oxaloacetate decarboxylating).
  
  
 0.419
htpX
Heat shock protein; Belongs to the peptidase M48B family.
  
  
 0.419
Your Current Organism:
Methanosarcina acetivorans
NCBI taxonomy Id: 188937
Other names: M. acetivorans C2A, Methanosarcina acetivorans C2A, Methanosarcina acetivorans str. C2A
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