istB-8 protein (Methanosarcina acetivorans) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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Gene Fusion

Cooccurrence

Coexpression

Experiments

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[Homology]

Score

istB-8

IstB helper protein. (257 aa)

Predicted Functional Partners:

MA_2202

0.777

rpl40e

0.697

psmA

0.672

psmB

0.670

MA_2888

0.525

pcnA

0.472

map

0.455

ybtQ

0.444

ybtP

0.444

MA_2939

0.444

Your Current Organism:

Methanosarcina acetivorans

NCBI taxonomy Id: 188937
Other names: M. acetivorans C2A, Methanosarcina acetivorans C2A, Methanosarcina acetivorans str. C2A

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MA_2202	istB-8	MA_2202	MA_2201	Transposase.	IstB helper protein.	0.777
MA_2888	MA_2939	MA_2888	MA_2939	Histone deacetylase.	Hypothetical protein.	0.635
MA_2888	istB-8	MA_2888	MA_2201	Histone deacetylase.	IstB helper protein.	0.525
MA_2888	rpl40e	MA_2888	MA_3970	Histone deacetylase.	Ribosomal protein L40e; Belongs to the eukaryotic ribosomal protein eL40 family.	0.874
MA_2888	ybtP	MA_2888	MA_2473	Histone deacetylase.	Iron ABC transporter; Permease and ATP-binding protein.	0.635
MA_2888	ybtQ	MA_2888	MA_2472	Histone deacetylase.	Iron ABC transporter; Permease and ATP-binding protein.	0.635
MA_2939	MA_2888	MA_2939	MA_2888	Hypothetical protein.	Histone deacetylase.	0.635
MA_2939	istB-8	MA_2939	MA_2201	Hypothetical protein.	IstB helper protein.	0.444
MA_2939	rpl40e	MA_2939	MA_3970	Hypothetical protein.	Ribosomal protein L40e; Belongs to the eukaryotic ribosomal protein eL40 family.	0.588
istB-8	MA_2202	MA_2201	MA_2202	IstB helper protein.	Transposase.	0.777
istB-8	MA_2888	MA_2201	MA_2888	IstB helper protein.	Histone deacetylase.	0.525
istB-8	MA_2939	MA_2201	MA_2939	IstB helper protein.	Hypothetical protein.	0.444
istB-8	map	MA_2201	MA_0212	IstB helper protein.	Methionyl aminopeptidase; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val); Belongs to the peptidase M24A family. Methionine aminopeptidase archaeal type 2 subfamily.	0.455
istB-8	pcnA	MA_2201	MA_0110	IstB helper protein.	Proliferating cell nuclear antigen; Sliding clamp subunit that acts as a moving platform for DNA processing. Responsible for tethering the catalytic subunit of DNA polymerase and other proteins to DNA during high-speed replication. Belongs to the PCNA family.	0.472
istB-8	psmA	MA_2201	MA_1779	IstB helper protein.	Multicatalytic endopeptidase complex, subunit alpha; Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation.	0.672
istB-8	psmB	MA_2201	MA_3873	IstB helper protein.	Multicatalytic endopeptidase complex, subunit beta; Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation.	0.670
istB-8	rpl40e	MA_2201	MA_3970	IstB helper protein.	Ribosomal protein L40e; Belongs to the eukaryotic ribosomal protein eL40 family.	0.697
istB-8	ybtP	MA_2201	MA_2473	IstB helper protein.	Iron ABC transporter; Permease and ATP-binding protein.	0.444
istB-8	ybtQ	MA_2201	MA_2472	IstB helper protein.	Iron ABC transporter; Permease and ATP-binding protein.	0.444
map	istB-8	MA_0212	MA_2201	Methionyl aminopeptidase; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val); Belongs to the peptidase M24A family. Methionine aminopeptidase archaeal type 2 subfamily.	IstB helper protein.	0.455