Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MA_2286Amino acid transporter. (430 aa)    
Predicted Functional Partners:
MA_1641
Alpha-amylase family protein.
  
 0.814
MA_0249
Citrate (si)-synthase.
   
 
 0.560
mttP
Ethanolamine permease.
  
     0.530
MA_2961
Proton/sodium-glutamate symporter.
 
 
 0.416
MA_2285
Large conductance mechanosensitive channel protein.
     
 0.414
MA_0491
Bacterial extracellular solute-binding family 3 protein.
 
 
 0.401
Your Current Organism:
Methanosarcina acetivorans
NCBI taxonomy Id: 188937
Other names: M. acetivorans C2A, Methanosarcina acetivorans C2A, Methanosarcina acetivorans str. C2A
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