STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MA_2313Polysaccharide biosynthesis protein. (515 aa)    
Predicted Functional Partners:
MA_2314
Predicted protein.
       0.750
MA_4457
UDP-glucose 6-dehydrogenase.
  
  
 0.742
MA_2315
Predicted protein.
       0.741
MA_1909
Hypothetical protein.
 
  
 0.621
rfbC
dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.
  
  
 0.584
MA_2186
dTDP-glucose 4,6-dehydratase.
  
  
 0.575
rfbB
dTDP-glucose 4,6-dehydratase.
  
  
 0.575
MA_3757
Mannosyltransferase B.
 
  
 0.468
MA_2175
Membrane-bound galactosyl-transferase.
 
  
 0.467
MA_1175
Mannosyltransferase.
 
  
 0.462
Your Current Organism:
Methanosarcina acetivorans
NCBI taxonomy Id: 188937
Other names: M. acetivorans C2A, Methanosarcina acetivorans C2A, Methanosarcina acetivorans str. C2A
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.