Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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[Homology]
Score
atp-1H(+)-transporting ATP synthase, gene 1. (112 aa)    
Predicted Functional Partners:
MA_2440
H(+)-transporting ATP synthase, subunit epsilon.
 
     0.948
MA_2438
Conserved hypothetical protein.
 
     0.946
MA_2437
H(+)-transporting ATP synthase, subunit A.
 
     0.945
MA_2435
H(+)-transporting ATP synthase, subunit B.
 
     0.901
MA_2433
H(+)-transporting ATP synthase, subunit gamma.
 
     0.895
MA_2436
H(+)-transporting ATP synthase, subunit C.
 
     0.895
MA_2441
H(+)-transporting ATP synthase, subunit beta.
 
     0.857
MA_2434
H(+)-transporting ATP synthase, subunit alpha.
 
     0.708
Your Current Organism:
Methanosarcina acetivorans
NCBI taxonomy Id: 188937
Other names: M. acetivorans C2A, Methanosarcina acetivorans C2A, Methanosarcina acetivorans str. C2A
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