Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MA_2464Conserved hypothetical protein. (309 aa)    
Predicted Functional Partners:
icaA
Glucosaminyltransferase.
 
  
 0.749
MA_2463
Predicted protein.
 
     0.690
dpm-2
Dolichyl-phosphate beta-D-mannosyltransferase related protein.
 
   
 0.583
MA_2460
Predicted protein.
       0.580
MA_2461
Predicted protein.
       0.580
cysS
cysteinyl-tRNA synthetase.
  
  
 0.576
dapB
Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate.
  
  
 0.500
idh
Myo-inositol 2-dehydrogenase.
 
  
 0.495
MA_0108
Glyoxalase.
 
  
 0.483
MA_3767
N-acetylneuraminic acid phosphate synthase.
 
  
 0.451
Your Current Organism:
Methanosarcina acetivorans
NCBI taxonomy Id: 188937
Other names: M. acetivorans C2A, Methanosarcina acetivorans C2A, Methanosarcina acetivorans str. C2A
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