MA_2501 protein (Methanosarcina acetivorans)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

MA_2501

Cation-transporting P-type ATPase. (947 aa)

Predicted Functional Partners:

MA_3020

0.695

MA_2502

0.599

rps8

0.534

MA_1381

0.530

MA_2301

0.530

MA_0916

0.524

MA_3330

0.524

MA_2309

0.518

rps13

0.517

MA_2500

0.513

Your Current Organism:

Methanosarcina acetivorans

NCBI taxonomy Id: 188937
Other names: M. acetivorans C2A, Methanosarcina acetivorans C2A, Methanosarcina acetivorans str. C2A

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MA_0916	MA_1381	MA_0916	MA_1381	Erythrocyte band 7 integral membrane protein.	GTP-binding protein.	0.814
MA_0916	MA_2301	MA_0916	MA_2301	Erythrocyte band 7 integral membrane protein.	Hypothetical protein; Contains leucine-rich tandem repeats.	0.814
MA_0916	MA_2501	MA_0916	MA_2501	Erythrocyte band 7 integral membrane protein.	Cation-transporting P-type ATPase.	0.524
MA_0916	MA_3330	MA_0916	MA_3330	Erythrocyte band 7 integral membrane protein.	Conserved hypothetical protein.	0.480
MA_1381	MA_0916	MA_1381	MA_0916	GTP-binding protein.	Erythrocyte band 7 integral membrane protein.	0.814
MA_1381	MA_2309	MA_1381	MA_2309	GTP-binding protein.	Hypothetical protein (multi-domain).	0.762
MA_1381	MA_2501	MA_1381	MA_2501	GTP-binding protein.	Cation-transporting P-type ATPase.	0.530
MA_1381	MA_3020	MA_1381	MA_3020	GTP-binding protein.	Conserved hypothetical protein.	0.507
MA_1381	rps13	MA_1381	MA_1108	GTP-binding protein.	Ribosomal protein S13p; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement; Belongs to the universal ribosomal protein uS13 family.	0.502
MA_1381	rps8	MA_1381	MA_1087	GTP-binding protein.	Ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family.	0.665
MA_2301	MA_0916	MA_2301	MA_0916	Hypothetical protein; Contains leucine-rich tandem repeats.	Erythrocyte band 7 integral membrane protein.	0.814
MA_2301	MA_2309	MA_2301	MA_2309	Hypothetical protein; Contains leucine-rich tandem repeats.	Hypothetical protein (multi-domain).	0.825
MA_2301	MA_2501	MA_2301	MA_2501	Hypothetical protein; Contains leucine-rich tandem repeats.	Cation-transporting P-type ATPase.	0.530
MA_2301	MA_3020	MA_2301	MA_3020	Hypothetical protein; Contains leucine-rich tandem repeats.	Conserved hypothetical protein.	0.433
MA_2301	rps13	MA_2301	MA_1108	Hypothetical protein; Contains leucine-rich tandem repeats.	Ribosomal protein S13p; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement; Belongs to the universal ribosomal protein uS13 family.	0.502
MA_2301	rps8	MA_2301	MA_1087	Hypothetical protein; Contains leucine-rich tandem repeats.	Ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family.	0.619
MA_2309	MA_1381	MA_2309	MA_1381	Hypothetical protein (multi-domain).	GTP-binding protein.	0.762
MA_2309	MA_2301	MA_2309	MA_2301	Hypothetical protein (multi-domain).	Hypothetical protein; Contains leucine-rich tandem repeats.	0.825
MA_2309	MA_2501	MA_2309	MA_2501	Hypothetical protein (multi-domain).	Cation-transporting P-type ATPase.	0.518
MA_2309	MA_3330	MA_2309	MA_3330	Hypothetical protein (multi-domain).	Conserved hypothetical protein.	0.636