Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MA_2523Predicted protein. (524 aa)    
Predicted Functional Partners:
MA_2563
Hypothetical protein.
  
     0.632
MA_2525
WD40-repeat containing protein.
 
     0.568
MA_2580
WD-domain containing protein.
 
     0.518
MA_3292
Conserved hypothetical protein.
  
     0.511
MA_2243
Conserved hypothetical protein.
 
     0.484
MA_3612
Hypothetical protein (multi-domain).
  
     0.478
MA_1839
Hypothetical protein (multi-domain).
  
     0.459
MA_2807
Hypothetical protein (multi-domain).
  
     0.444
MA_3275
Hypothetical protein (multi-domain).
  
     0.422
MA_3418
Conserved hypothetical protein.
  
     0.420
Your Current Organism:
Methanosarcina acetivorans
NCBI taxonomy Id: 188937
Other names: M. acetivorans C2A, Methanosarcina acetivorans C2A, Methanosarcina acetivorans str. C2A
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