Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MA_2744Predicted protein. (102 aa)    
Predicted Functional Partners:
MA_2745
Conserved hypothetical protein.
       0.780
MA_2309
Hypothetical protein (multi-domain).
   
 
 0.739
rps3
Ribosomal protein S3p; Binds the lower part of the 30S subunit head. Belongs to the universal ribosomal protein uS3 family.
  
 0.717
ybtQ
Iron ABC transporter; Permease and ATP-binding protein.
  
 0.672
ybtP
Iron ABC transporter; Permease and ATP-binding protein.
  
 0.672
MA_2939
Hypothetical protein.
  
 0.672
rps9
Ribosomal protein S9p; Belongs to the universal ribosomal protein uS9 family.
   
 0.664
rps5
Ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy.
  
 0.584
fibM
Fibrillarin; Involved in pre-rRNA and tRNA processing. Utilizes the methyl donor S-adenosyl-L-methionine to catalyze the site-specific 2'-hydroxyl methylation of ribose moieties in rRNA and tRNA. Site specificity is provided by a guide RNA that base pairs with the substrate. Methylation occurs at a characteristic distance from the sequence involved in base pairing with the guide RNA; Belongs to the methyltransferase superfamily. Fibrillarin family.
  
 0.558
deaD
ATP-dependent RNA helicase; Belongs to the DEAD box helicase family.
  
 0.558
Your Current Organism:
Methanosarcina acetivorans
NCBI taxonomy Id: 188937
Other names: M. acetivorans C2A, Methanosarcina acetivorans C2A, Methanosarcina acetivorans str. C2A
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