Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MA_2838Conserved hypothetical protein. (427 aa)    
Predicted Functional Partners:
MA_2839
ABC transporter, permease protein.
 
    0.840
MA_1576
Predicted protein.
 
     0.682
MA_0441
Hypothetical protein (multi-domain).
  
     0.680
MA_1572
Predicted protein.
  
     0.672
MA_1738
Cell surface protein.
 
     0.656
MA_0793
Predicted protein.
  
     0.653
MA_1517
Cell surface protein.
  
     0.643
MA_3664
Cell surface protein.
  
     0.640
MA_1837
Predicted protein.
  
     0.622
MA_3369
Hypothetical protein (multi-domain).
  
     0.615
Your Current Organism:
Methanosarcina acetivorans
NCBI taxonomy Id: 188937
Other names: M. acetivorans C2A, Methanosarcina acetivorans C2A, Methanosarcina acetivorans str. C2A
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