Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MA_2938Predicted protein. (69 aa)    
Predicted Functional Partners:
MA_2937
Predicted protein.
 
     0.931
MA_0836
Transposase.
  
     0.586
MA_0839
Predicted protein.
 
     0.499
MA_2161
Conserved hypothetical protein.
  
     0.442
MA_2702
Hypothetical protein (multi-domain).
  
     0.434
MA_1649
Conserved hypothetical protein.
  
     0.428
MA_2471
Conserved hypothetical protein.
  
     0.425
MA_3374
Conserved hypothetical protein.
  
     0.425
MA_4224
Conserved hypothetical protein.
  
     0.425
MA_4107
Conserved hypothetical protein.
  
     0.422
Your Current Organism:
Methanosarcina acetivorans
NCBI taxonomy Id: 188937
Other names: M. acetivorans C2A, Methanosarcina acetivorans C2A, Methanosarcina acetivorans str. C2A
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