Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MA_2949Predicted protein. (151 aa)    
Predicted Functional Partners:
MA_2948
Transcriptional regulator, TetR family.
 
     0.648
MA_2950
Predicted protein.
       0.427
MA_0558
Conserved hypothetical protein.
  
     0.411
MA_0561
Conserved hypothetical protein.
  
     0.411
MA_0982
Pin protein.
  
     0.411
MA_0560
Conserved hypothetical protein.
  
     0.410
MA_0556
Conserved hypothetical protein.
  
     0.409
MA_0557
Conserved hypothetical protein.
  
     0.409
MA_1194
Predicted protein.
  
     0.406
Your Current Organism:
Methanosarcina acetivorans
NCBI taxonomy Id: 188937
Other names: M. acetivorans C2A, Methanosarcina acetivorans C2A, Methanosarcina acetivorans str. C2A
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