Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
oppF-3Oligopeptide ABC transporter, ATP-binding protein. (328 aa)    
Predicted Functional Partners:
oppD-4
Oligopeptide ABC transporter, ATP-binding protein.
 
 
0.896
oppC-4
Oligopeptide ABC transporter, permease protein.
 
 0.790
oppB-5
Oligopeptide ABC transporter, permease protein.
 
 
 0.735
MA_2480
Peptide ABC transporter, permease protein.
 
 0.692
oppC-2
Oligopeptide ABC transporter, permease protein.
 
 0.670
oppC-3
Oligopeptide ABC transporter, permease.
 
 0.667
oppC
Oligopeptide ABC transporter, permease protein.
 
 0.651
oppA-5
Oligopeptide ABC transporter, solute-binding protein.
 
 
 0.641
oppC-6
Oligopeptide ABC transporter, permease protein.
 
 0.638
MA_3463
ABC transporter, permease protein.
 
 0.637
Your Current Organism:
Methanosarcina acetivorans
NCBI taxonomy Id: 188937
Other names: M. acetivorans C2A, Methanosarcina acetivorans C2A, Methanosarcina acetivorans str. C2A
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