flaI-2 protein (Methanosarcina acetivorans) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

flaI-2

Flagella accessory protein I. (611 aa)

Predicted Functional Partners:

flaJ-2

0.987

flaH-2

0.983

flaJ

0.957

flaH

0.957

flaB

0.926

flaB-2

0.924

flaB-3

0.880

MA_3079

0.746

MA_3097

0.732

MA_3098

0.726

Your Current Organism:

Methanosarcina acetivorans

NCBI taxonomy Id: 188937
Other names: M. acetivorans C2A, Methanosarcina acetivorans C2A, Methanosarcina acetivorans str. C2A

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MA_3079	flaB-3	MA_3079	MA_3077	Conserved hypothetical protein.	Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of archaeal flagella.	0.564
MA_3079	flaH	MA_3079	MA_3057	Conserved hypothetical protein.	Flagella accessory protein H.	0.521
MA_3079	flaH-2	MA_3079	MA_3081	Conserved hypothetical protein.	Flagella accessory protein H.	0.731
MA_3079	flaI-2	MA_3079	MA_3082	Conserved hypothetical protein.	Flagella accessory protein I.	0.746
MA_3079	flaJ	MA_3079	MA_3055	Conserved hypothetical protein.	Flagella accessory protein J.	0.656
MA_3079	flaJ-2	MA_3079	MA_3083	Conserved hypothetical protein.	Flagella accessory protein J.	0.776
MA_3097	MA_3098	MA_3097	MA_3098	Conserved hypothetical protein.	Hypothetical protein (multi-domain).	0.978
MA_3097	flaI-2	MA_3097	MA_3082	Conserved hypothetical protein.	Flagella accessory protein I.	0.732
MA_3097	flaJ	MA_3097	MA_3055	Conserved hypothetical protein.	Flagella accessory protein J.	0.428
MA_3097	flaJ-2	MA_3097	MA_3083	Conserved hypothetical protein.	Flagella accessory protein J.	0.475
MA_3098	MA_3097	MA_3098	MA_3097	Hypothetical protein (multi-domain).	Conserved hypothetical protein.	0.978
MA_3098	flaB	MA_3098	MA_3061	Hypothetical protein (multi-domain).	Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of archaeal flagella.	0.422
MA_3098	flaI-2	MA_3098	MA_3082	Hypothetical protein (multi-domain).	Flagella accessory protein I.	0.726
MA_3098	flaJ-2	MA_3098	MA_3083	Hypothetical protein (multi-domain).	Flagella accessory protein J.	0.449
flaB	MA_3098	MA_3061	MA_3098	Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of archaeal flagella.	Hypothetical protein (multi-domain).	0.422
flaB	flaB-2	MA_3061	MA_3062	Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of archaeal flagella.	Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of archaeal flagella.	0.772
flaB	flaH	MA_3061	MA_3057	Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of archaeal flagella.	Flagella accessory protein H.	0.978
flaB	flaH-2	MA_3061	MA_3081	Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of archaeal flagella.	Flagella accessory protein H.	0.961
flaB	flaI-2	MA_3061	MA_3082	Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of archaeal flagella.	Flagella accessory protein I.	0.926
flaB	flaJ	MA_3061	MA_3055	Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of archaeal flagella.	Flagella accessory protein J.	0.978