Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MA_3171ABC transporter, ATP-binding protein. (274 aa)    
Predicted Functional Partners:
MA_3173
ABC transporter, permease protein.
 
 0.970
MA_1744
Conserved hypothetical protein.
 
 0.933
MA_1118
ABC transporter, permease protein.
 
 0.916
MA_2550
ABC transporter, permease protein.
 
 0.898
MA_3959
ABC transporter, permease protein.
 
 0.886
MA_0447
Conserved hypothetical protein.
 
 0.881
MA_3963
ABC transporter, permease protein.
 
 0.863
MA_2272
ABC transporter, permease protein.
 
 0.837
MA_3172
Conserved hypothetical protein.
 
    0.831
MA_0374
Conserved hypothetical protein.
 
 
 0.795
Your Current Organism:
Methanosarcina acetivorans
NCBI taxonomy Id: 188937
Other names: M. acetivorans C2A, Methanosarcina acetivorans C2A, Methanosarcina acetivorans str. C2A
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