Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MA_3286Universal stress protein. (150 aa)    
Predicted Functional Partners:
MA_1368
Thioredoxin reductase (NADPH).
  
  
 0.709
MA_3939
Conserved hypothetical protein.
  
  
 0.634
MA_3937
Conserved hypothetical protein.
     
 0.626
MA_3703
Cell surface glycoprotein.
      
 0.618
dppA
Dipeptide ABC transporter, solute-binding protein.
  
  
 0.533
dppA-2
Dipeptide ABC transporter, solute-binding protein.
  
  
 0.533
dppA-3
Dipeptide ABC transporter, solute-binding protein.
  
  
 0.533
dppA-4
Dipeptide ABC transporter, solute-binding protein.
  
  
 0.533
dppA-5
Dipeptide ABC transporter, solute-binding protein.
  
  
 0.533
MA_4235
F420-dependent NADP reductase.
      
 0.510
Your Current Organism:
Methanosarcina acetivorans
NCBI taxonomy Id: 188937
Other names: M. acetivorans C2A, Methanosarcina acetivorans C2A, Methanosarcina acetivorans str. C2A
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