Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MA_3372Conserved hypothetical protein. (209 aa)    
Predicted Functional Partners:
anfD
Nitrogenase, subunit D.
 
   
 0.674
vnfG
Nitrogenase, subunit delta.
  
     0.651
anfK
Nitrogenase, subunit K; Belongs to the NifD/NifK/NifE/NifN family.
  
     0.638
anfG
Nitrogenase, subunit delta.
  
     0.637
vnfD
Nitrogenase, subunit alpha; Belongs to the NifD/NifK/NifE/NifN family.
 
   
 0.634
vnfK
Nitrogenase, subunit beta; Belongs to the NifD/NifK/NifE/NifN family.
  
     0.630
MA_1224
Conserved hypothetical protein.
  
     0.565
MA_2323
Conserved hypothetical protein.
  
     0.564
vnfE
Nitrogenase associated protein E.
 
   
 0.533
vnfN
Nitrogenase associated protein N.
 
   
 0.441
Your Current Organism:
Methanosarcina acetivorans
NCBI taxonomy Id: 188937
Other names: M. acetivorans C2A, Methanosarcina acetivorans C2A, Methanosarcina acetivorans str. C2A
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