MA_3451 protein (Methanosarcina acetivorans)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

MA_3451

Iron ABC transporter, solute-binding protein. (424 aa)

Predicted Functional Partners:

MA_3452

0.875

MA_3453

0.830

MA_3450

0.793

MA_3358

0.748

MA_3642

0.738

MA_0950

0.731

MA_4532

0.724

MA_3449

0.717

MA_1198

0.707

MA_1233

0.699

Your Current Organism:

Methanosarcina acetivorans

NCBI taxonomy Id: 188937
Other names: M. acetivorans C2A, Methanosarcina acetivorans C2A, Methanosarcina acetivorans str. C2A

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
MA_0950	MA_1198	Ferric enterobactin transport ATP-binding protein.	Iron ABC transporter, ATP-binding protein.	0.901
MA_0950	MA_1233	Ferric enterobactin transport ATP-binding protein.	iron(III) ABC transporter, ATP-binding protein.	0.902
MA_0950	MA_3358	Ferric enterobactin transport ATP-binding protein.	iron(III) ABC transporter, ATP-binding protein.	0.903
MA_0950	MA_3451	Ferric enterobactin transport ATP-binding protein.	Iron ABC transporter, solute-binding protein.	0.731
MA_0950	MA_3452	Ferric enterobactin transport ATP-binding protein.	Iron ABC transporter, permease.	0.641
MA_0950	MA_3453	Ferric enterobactin transport ATP-binding protein.	Iron ABC transporter, ATP-binding protein.	0.905
MA_0950	MA_3642	Ferric enterobactin transport ATP-binding protein.	Iron ABC transporter, ATP-binding protein.	0.902
MA_0950	MA_4532	Ferric enterobactin transport ATP-binding protein.	Iron compounds ABC transporter, ATP-binding protein.	0.902
MA_1198	MA_0950	Iron ABC transporter, ATP-binding protein.	Ferric enterobactin transport ATP-binding protein.	0.901
MA_1198	MA_1233	Iron ABC transporter, ATP-binding protein.	iron(III) ABC transporter, ATP-binding protein.	0.903
MA_1198	MA_3358	Iron ABC transporter, ATP-binding protein.	iron(III) ABC transporter, ATP-binding protein.	0.902
MA_1198	MA_3451	Iron ABC transporter, ATP-binding protein.	Iron ABC transporter, solute-binding protein.	0.707
MA_1198	MA_3452	Iron ABC transporter, ATP-binding protein.	Iron ABC transporter, permease.	0.443
MA_1198	MA_3453	Iron ABC transporter, ATP-binding protein.	Iron ABC transporter, ATP-binding protein.	0.904
MA_1198	MA_3642	Iron ABC transporter, ATP-binding protein.	Iron ABC transporter, ATP-binding protein.	0.900
MA_1198	MA_4532	Iron ABC transporter, ATP-binding protein.	Iron compounds ABC transporter, ATP-binding protein.	0.904
MA_1233	MA_0950	iron(III) ABC transporter, ATP-binding protein.	Ferric enterobactin transport ATP-binding protein.	0.902
MA_1233	MA_1198	iron(III) ABC transporter, ATP-binding protein.	Iron ABC transporter, ATP-binding protein.	0.903
MA_1233	MA_3358	iron(III) ABC transporter, ATP-binding protein.	iron(III) ABC transporter, ATP-binding protein.	0.902
MA_1233	MA_3451	iron(III) ABC transporter, ATP-binding protein.	Iron ABC transporter, solute-binding protein.	0.699