STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
feoBFerrous iron transport protein B. (670 aa)    
Predicted Functional Partners:
MA_3479
Ferrous iron transport protein A.
 
  
 0.994
MA_3478
Conserved hypothetical protein.
 
  
 0.961
MA_3476
Predicted protein.
       0.819
MA_3475
Predicted protein.
       0.792
nirD
Heme d1 biosynthesis protein precursor NirD.
     
 0.641
ccmC
Heme exporter protein C.
     
 0.617
sufC
ABC transporter, ATP-binding protein.
     
 0.608
nirJ
Heme d1 biosynthesis protein NirJ.
 
   
 0.601
MA_3304
Cytochrome c-type synthesis protein.
     
 0.601
pqqE
Coenzyme PQQ synthesis protein E.
 
   
 0.598
Your Current Organism:
Methanosarcina acetivorans
NCBI taxonomy Id: 188937
Other names: M. acetivorans C2A, Methanosarcina acetivorans C2A, Methanosarcina acetivorans str. C2A
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.