Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MA_3479Ferrous iron transport protein A. (82 aa)    
Predicted Functional Partners:
feoB
Ferrous iron transport protein B.
 
  
 0.997
MA_3478
Conserved hypothetical protein.
 
   
 0.949
MA_3476
Predicted protein.
       0.929
feoB-2
Ferrous iron transport protein B.
 
  
 0.926
MA_3475
Predicted protein.
       0.887
nirD
Heme d1 biosynthesis protein precursor NirD.
  
  
 0.670
nirH
Heme d1 biosynthesis protein NirH.
  
  
 0.666
MA_3304
Cytochrome c-type synthesis protein.
     
 0.630
pqqE
Coenzyme PQQ synthesis protein E.
     
 0.620
nirJ
Heme d1 biosynthesis protein NirJ.
     
 0.618
Your Current Organism:
Methanosarcina acetivorans
NCBI taxonomy Id: 188937
Other names: M. acetivorans C2A, Methanosarcina acetivorans C2A, Methanosarcina acetivorans str. C2A
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