Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
MA_3758Rhamnosyl transferase. (342 aa)    
Predicted Functional Partners:
rfbD
dTDP-4-dehydrorhamnose reductase.
 
  
 0.808
MA_1176
Polysaccharide ABC transporter, permease protein.
 
  
 0.718
rfbC
dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.
 
  
 0.686
MA_1177
Polysaccharide ABC transporter, ATP-binding protein.
 
  
 0.607
MA_1175
Mannosyltransferase.
 
  
 0.595
rfbB
dTDP-glucose 4,6-dehydratase.
 
  
 0.547
rfbM-2
Mannose-1-phosphate guanylyltransferase (GDP); Belongs to the mannose-6-phosphate isomerase type 2 family.
 
  
 0.547
MA_2186
dTDP-glucose 4,6-dehydratase.
 
  
 0.546
MA_1909
Hypothetical protein.
 
  
 0.483
MA_3755
Lipopolysaccharide transferase family protein.
 
  
 0.476
Your Current Organism:
Methanosarcina acetivorans
NCBI taxonomy Id: 188937
Other names: M. acetivorans C2A, Methanosarcina acetivorans C2A, Methanosarcina acetivorans str. C2A
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