Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
MA_3904ubiE/COQ5 methyltransferase. (251 aa)    
Predicted Functional Partners:
oppA-6
Oligopeptide ABC transporter, solute-binding protein.
       0.777
oppB-6
Oligopeptide ABC transporter, permease protein.
       0.757
oppC-5
Oligopeptide ABC transporter, permease protein.
       0.757
oppD-5
Oligopeptide ABC transporter, ATP-binding protein.
       0.716
oppF-4
Oligopeptide ABC transporter, ATP-binding protein.
       0.716
rps5
Ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy.
    
 0.564
MA_3910
Conserved hypothetical protein.
  
    0.529
fpoB
F(420)H(2) dehydrogenase, subunit FpoB; Belongs to the complex I 20 kDa subunit family.
   
 0.519
fpoD
F(420)H(2) dehydrogenase, subunit FpoD.
   
 0.511
MA_2309
Hypothetical protein (multi-domain).
   
 
 0.470
Your Current Organism:
Methanosarcina acetivorans
NCBI taxonomy Id: 188937
Other names: M. acetivorans C2A, Methanosarcina acetivorans C2A, Methanosarcina acetivorans str. C2A
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