Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MA_3963ABC transporter, permease protein. (412 aa)    
Predicted Functional Partners:
MA_3957
ABC transporter, ATP-binding protein.
 
 0.925
MA_0377
ABC transporter, ATP-binding protein.
 
 0.911
MA_3960
ABC transporter, ATP-binding protein.
 
 0.894
MA_1752
ABC transporter, ATP-binding protein.
 
 0.877
MA_2840
ABC transporter, ATP-binding protein.
 
 0.873
MA_3171
ABC transporter, ATP-binding protein.
 
 0.863
MA_2548
ABC transporter, ATP-binding protein.
 
 0.859
MA_1120
ABC transporter, ATP-binding protein.
 
 0.858
MA_2275
ABC transporter, ATP-binding protein.
 
 0.851
lolD-2
ABC transporter, ATP-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner.
 
 0.845
Your Current Organism:
Methanosarcina acetivorans
NCBI taxonomy Id: 188937
Other names: M. acetivorans C2A, Methanosarcina acetivorans C2A, Methanosarcina acetivorans str. C2A
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