MA_4023 protein (Methanosarcina acetivorans)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

MA_4023

Cobalamin biosynthesis protein. (331 aa)

Predicted Functional Partners:

MA_4022

0.999

MA_4021

0.993

MA_4019

0.986

MA_4020

0.978

cbiN

0.968

cbiQ-4

0.966

cbiQ

0.964

cbiO

0.938

cbiO-2

0.933

cbiM

0.922

Your Current Organism:

Methanosarcina acetivorans

NCBI taxonomy Id: 188937
Other names: M. acetivorans C2A, Methanosarcina acetivorans C2A, Methanosarcina acetivorans str. C2A

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MA_4019	MA_4020	MA_4019	MA_4020	Cobalt transport protein.	ABC transporter, ATP-binding protein; Probably part of an ABC transporter complex. Responsible for energy coupling to the transport system (By similarity).	0.995
MA_4019	MA_4021	MA_4019	MA_4021	Cobalt transport protein.	ABC transporter, ATP-binding protein; Probably part of an ABC transporter complex. Responsible for energy coupling to the transport system (By similarity).	0.968
MA_4019	MA_4022	MA_4019	MA_4022	Cobalt transport protein.	Cobalt transport protein.	0.942
MA_4019	MA_4023	MA_4019	MA_4023	Cobalt transport protein.	Cobalamin biosynthesis protein.	0.986
MA_4019	cbiM	MA_4019	MA_3554	Cobalt transport protein.	Cobalamin biosynthesis protein; Part of the energy-coupling factor (ECF) transporter complex CbiMNOQ involved in cobalt import.	0.938
MA_4019	cbiN	MA_4019	MA_3553	Cobalt transport protein.	Cobalt ABC transporter, solute-binding protein; Part of the energy-coupling factor (ECF) transporter complex CbiMNOQ involved in cobalt import; Belongs to the CbiN family.	0.925
MA_4019	cbiO	MA_4019	MA_0394	Cobalt transport protein.	Cobalt ABC transporter, ATP-binding protein; Probably part of an ABC transporter complex. Responsible for energy coupling to the transport system (By similarity).	0.962
MA_4019	cbiO-2	MA_4019	MA_3551	Cobalt transport protein.	Cobalt ABC transporter, ATP-binding protein; Probably part of an ABC transporter complex. Responsible for energy coupling to the transport system (By similarity).	0.963
MA_4019	cbiQ	MA_4019	MA_0393	Cobalt transport protein.	Cobalt ABC transporter, permease protein.	0.918
MA_4019	cbiQ-4	MA_4019	MA_3552	Cobalt transport protein.	Cobalt ABC transporter, permease protein.	0.942
MA_4020	MA_4019	MA_4020	MA_4019	ABC transporter, ATP-binding protein; Probably part of an ABC transporter complex. Responsible for energy coupling to the transport system (By similarity).	Cobalt transport protein.	0.995
MA_4020	MA_4021	MA_4020	MA_4021	ABC transporter, ATP-binding protein; Probably part of an ABC transporter complex. Responsible for energy coupling to the transport system (By similarity).	ABC transporter, ATP-binding protein; Probably part of an ABC transporter complex. Responsible for energy coupling to the transport system (By similarity).	0.455
MA_4020	MA_4022	MA_4020	MA_4022	ABC transporter, ATP-binding protein; Probably part of an ABC transporter complex. Responsible for energy coupling to the transport system (By similarity).	Cobalt transport protein.	0.985
MA_4020	MA_4023	MA_4020	MA_4023	ABC transporter, ATP-binding protein; Probably part of an ABC transporter complex. Responsible for energy coupling to the transport system (By similarity).	Cobalamin biosynthesis protein.	0.978
MA_4020	cbiM	MA_4020	MA_3554	ABC transporter, ATP-binding protein; Probably part of an ABC transporter complex. Responsible for energy coupling to the transport system (By similarity).	Cobalamin biosynthesis protein; Part of the energy-coupling factor (ECF) transporter complex CbiMNOQ involved in cobalt import.	0.983
MA_4020	cbiN	MA_4020	MA_3553	ABC transporter, ATP-binding protein; Probably part of an ABC transporter complex. Responsible for energy coupling to the transport system (By similarity).	Cobalt ABC transporter, solute-binding protein; Part of the energy-coupling factor (ECF) transporter complex CbiMNOQ involved in cobalt import; Belongs to the CbiN family.	0.978
MA_4020	cbiO	MA_4020	MA_0394	ABC transporter, ATP-binding protein; Probably part of an ABC transporter complex. Responsible for energy coupling to the transport system (By similarity).	Cobalt ABC transporter, ATP-binding protein; Probably part of an ABC transporter complex. Responsible for energy coupling to the transport system (By similarity).	0.908
MA_4020	cbiO-2	MA_4020	MA_3551	ABC transporter, ATP-binding protein; Probably part of an ABC transporter complex. Responsible for energy coupling to the transport system (By similarity).	Cobalt ABC transporter, ATP-binding protein; Probably part of an ABC transporter complex. Responsible for energy coupling to the transport system (By similarity).	0.908
MA_4020	cbiQ	MA_4020	MA_0393	ABC transporter, ATP-binding protein; Probably part of an ABC transporter complex. Responsible for energy coupling to the transport system (By similarity).	Cobalt ABC transporter, permease protein.	0.985
MA_4020	cbiQ-4	MA_4020	MA_3552	ABC transporter, ATP-binding protein; Probably part of an ABC transporter complex. Responsible for energy coupling to the transport system (By similarity).	Cobalt ABC transporter, permease protein.	0.985