Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ssrSite-specific recombinase. (123 aa)    
Predicted Functional Partners:
MA_0120
Conserved hypothetical protein.
 
     0.602
MA_4125
Conserved hypothetical protein.
       0.533
MA_4126
Conserved hypothetical protein.
       0.533
MA_1372
Conserved hypothetical protein; Belongs to the UPF0212 family.
  
     0.517
MA_1382
Conserved hypothetical protein.
  
     0.512
MA_4581
Phosphoribosyltransferase.
  
     0.472
MA_3528
Conserved hypothetical protein.
 
     0.471
MA_3018
Conserved hypothetical protein.
  
     0.443
MA_4505
Conserved hypothetical protein.
 
   
 0.443
MA_3976
Conserved hypothetical protein.
 
     0.441
Your Current Organism:
Methanosarcina acetivorans
NCBI taxonomy Id: 188937
Other names: M. acetivorans C2A, Methanosarcina acetivorans C2A, Methanosarcina acetivorans str. C2A
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