STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MA_4202Conserved hypothetical protein. (233 aa)    
Predicted Functional Partners:
MA_2525
WD40-repeat containing protein.
 
 0.879
MA_2580
WD-domain containing protein.
 
 0.879
MA_2301
Hypothetical protein; Contains leucine-rich tandem repeats.
  
 0.877
MA_1519
WD-domain containing protein.
 
 0.872
MA_1381
GTP-binding protein.
   
 0.861
MA_1856
Predicted protein.
 
 
 0.858
MA_1857
Predicted protein.
 
 
 0.857
MA_0873
PQQ enzyme repeat domain protein.
  
 0.851
MA_0874
Predicted protein.
  
 0.851
rpl7ae
Ribosomal protein L7ae; Multifunctional RNA-binding protein that recognizes the K- turn motif in ribosomal RNA, the RNA component of RNase P, box H/ACA, box C/D and box C'/D' sRNAs.
   
 0.842
Your Current Organism:
Methanosarcina acetivorans
NCBI taxonomy Id: 188937
Other names: M. acetivorans C2A, Methanosarcina acetivorans C2A, Methanosarcina acetivorans str. C2A
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.